On the other hand, remove.packages will still remove only packages installed in your user library. If a package is not available, then it just falls back to normal installation from CRAN.
In the R console, and packages will be automatically installed from the Copr repository.
#INSTALL R STUDIO WITH BREW INSTALL#
In this way, you can install or update packages in R as you normally do, e.g., install.packages("car") The last command is optional, but recommended, because the CoprManager package integrates binary package installation into your R session. To enable this Copr repository in your system: $ sudo dnf install 'dnf-command(copr)' To ensure compatibility with the official repositories, these set of packages are named “R-CRAN-pkgname” (instead of “R-pkgname”), and are installed into /usr/local/lib/R/library. These repositories are automatically synchronized with CRAN every day at 00:00 UTC through a GitHub Action that removes archived packages and builds the most recent updates. The cran2copr project maintains binary RPM repositories for the current and previous stable Fedora version for most of CRAN (more than 18k packages as of May 2022) in an automated way using Fedora Copr. Note that the classification is not mutually exclusive (e.g. R-RCurl appears several times) and that there are RPMs that are not available from any standard R repository. # "RM2" "Rcompression" "Rsolid" "fts" "nws" # "mime" "png" "servr" "testit" "tikzDevice" # "formatR" "highr" "jpeg" "knitr" "markdown" # "Cairo" "base64enc" "brew" "evaluate" "fastmatch" # "timeDate" "timeSeries" "vcd" "waveslim" # "stringi" "systemfit" "TH.data" "tikzDevice" # "rgeos" "Rmpfr" "sandwich" "scatterplot3d" # "pbapply" "randomForest" "Rcpp" "rgdal" # "labeling" "lmodel2" "lokern" "matrixStats" # "highlight" "htmltools" "iterators" "itertools" # "gamlss.dist" "gdata" "gplots" "gtools" # "doParallel" "expm" "foreach" "fortunes" # "S4Vectors" "SummarizedExperiment" "tkWidgets" # "MatrixGenerics" "preprocessCore" "qvalue" # "DynDoc" "GenomeInfoDb" "GenomicAlignments" # "BSgenome" "BufferedMatrix" "DelayedArray" # "BiocFileCache" "BiocGenerics" "BiocIO" # "markdown" "matrixStats" "measurements" # "futile.options" "future" "gamlss.dist"
# "fontBitstreamVera" "fontLiberation" "forcats" The listing below shows all RPMs available for R packages on Fedora Linux 36 (Thirty Six), classified by the R repository that would normally be used to install the package from within R (see the help page ?chooseRepositories). Hence, running $ dnf repoquery -repo=fedora-source R-* A number of add-on packages from CRAN, Bioconductor and other sources are readily available via the official repositories. Recommended R packages are included as part of the R-core component. /home//R/-redhat-linux-gnu-library/, which is the destination for any package installed from the R console using install.packages.įor example, these are the library paths for a x86_64 machine with R 4.0 installed./usr/local/lib/R/library (the same for 64-bit architectures), which is not used by any package in the official repositories./usr/share/R/library contains system-provided packages without binary code.Īdditionally, the R installation adds the following paths:./usr/lib/R/library ( /usr/lib64/R/library in 64-bit architectures) contains system-provided packages with binary code./usr/share/R contains documentation, licenses and other non-binary files./usr/lib/R ( /usr/lib64/R in 64-bit architectures) contains R binaries and libraries.The R installation is divided in two directories:
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